PSORTdb
A database of protein subcellular localizations for bacteria

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Database download

PSORTb predictions for complete NCBI genomes can be accessed through either cPSORTdb queries or at the PSORTb Precomputed Genomes pages below:

Otherwise if you would like to download the complete database, two file formats are available (2 different compression formats for cPSORTdb, i.e. zip and gz):

  • MySQL dump files (to rebuild directly a MySQL database)
  • Tab-delimited files.

    (Note: these files are quite large. Please avoid opening them in your browser. Instead right click and save them to your hard drive. cPSORTdb version 1.1.2 are available upon request.)

Type of file
Gram Stain
cPSORTdb v.2.0
computational predictions

ePSORTdb
experimentally confirmed

MySQL
Negative

cpsortdb_neg.sql.zip (46 MB)

cpsortdb_neg.sql.gz (46 MB)

epsortdb.sql.zip (0.1 MB)

epsortdb.sql.gz (0.1 MB)
Positive

cpsortdb_pos.sql.zip (18 MB)

cpsortdb_pos.sql.gz (18 MB)
Tab-delimited
Negative

cpsortdb_neg.txt.zip (44 MB)

cpsortdb_neg.txt.gz (44 MB)

epsortdb.txt.zip (0.1 MB)

epsortdb.txt.gz (0.1 MB)
Positive

cpsortdb_pos.txt.zip (17 MB)

cpsortdb_pos.txt.gz (17 MB)

 
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