January 21, 2008:

cPSORTdb update

- The following recently sequenced bacterial chromosome has been added to the cPSORTdb dataset:

Clostridium phytofermentans ISDg

December 5, 2007:

cPSORTdb update

- The following recently sequenced bacterial chromosomes and plasmids have been added to the cPSORTdb dataset:

Gram negative:
Acidiphilium cryptum JF-5
Acidobacteria bacterium Ellin345
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Acinetobacter baumannii ATCC 17978
Actinobacillus pleuropneumoniae L20
Actinobacillus succinogenes 130Z
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas salmonicida subsp. salmonicida A449
Alcanivorax borkumensis SK2
Alkalilimnicola ehrlichei MLHE-1
Anaeromyxobacter sp. Fw109-5
Arcobacter butzleri RM4018
Azoarcus sp. BH72
Azorhizobium caulinodans ORS 571
Bacteroides vulgatus ATCC 8482
Bartonella bacilliformis KC583
Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
Borrelia afzelii PKo
Bradyrhizobium sp. BTAi1
Bradyrhizobium sp. ORS278
Brucella ovis ATCC 25840
Buchnera aphidicola str. Cc (Cinara cedri)
Buchnera aphidicola str. Bp (Baizongia pistaciae) plasmid pBBp1
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia mallei SAVP1
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400
Campylobacter concisus 13826
Campylobacter curvus 525.92
Campylobacter fetus subsp. fetus 82-40
Campylobacter hominis ATCC BAA-381
Campylobacter jejuni subsp. doylei 269.97
Campylobacter jejuni subsp. jejuni 81116
Campylobacter jejuni subsp. jejuni 81-176
Candidatus Carsonella ruddii PV
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Candidatus Vesicomyosocius okutanii HA
Chlorobium phaeobacteroides DSM 266
Chromohalobacter salexigens DSM 3043
Citrobacter koseri ATCC BAA-895
Coxiella burnetii Dugway 7E9-12
Cytophaga hutchinsonii ATCC 33406
Desulfovibrio vulgaris subsp. vulgaris DP4
Dichelobacter nodosus VCS1703A
Enterobacter sakazakii ATCC BAA-894
Enterobacter sp. 638
Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM
Escherichia coli APEC O1 plasmid pAPEC-O1-R
Escherichia coli E24377A
Escherichia coli HS
Escherichia coli O157:H7 EDL933 plasmid pO157
Fervidobacterium nodosum Rt17-B1
Flavobacterium johnsoniae UW101
Flavobacterium psychrophilum JIP02/86
Francisella tularensis subsp. holarctica FTA
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. novicida U112
Francisella tularensis subsp. tularensis FSC198
Francisella tularensis subsp. tularensis WY96-3418
Geobacter uraniumreducens Rf4
Gramella forsetii KT0803
Granulibacter bethesdensis CGDNIH1
Haemophilus influenzae PittEE
Haemophilus influenzae PittGG
Haemophilus somnus 129PT
Halorhodospira halophila SL1
Helicobacter acinonychis str. Sheeba
Helicobacter pylori HPAG1
Herminiimonas arsenicoxydans
Hyphomonas neptunium ATCC 15444
Janthinobacterium sp. Marseille
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Lawsonia intracellularis PHE/MN1-00
Legionella pneumophila str. Corby
Leptospira borgpetersenii serovar Hardjo-bovis JB197
Leptospira borgpetersenii serovar Hardjo-bovis L550
Magnetococcus sp. MC-1
Maricaulis maris MCS10
Marinobacter aquaeolei VT8
Marinomonas sp. MWYL1
Mesorhizobium sp. BNC1
Methylibium petroleiphilum PM1
Methylobacillus flagellatus KT
Mycoplasma agalactiae PG2
Myxococcus xanthus DK 1622
Neisseria meningitidis FAM18
Nitratiruptor sp. SB155-2
Nitrobacter hamburgensis X14
Nitrosomonas eutropha C91
Novosphingobium aromaticivorans DSM 12444 plasmid pNL1
Novosphingobium aromaticivorans DSM 12444 plasmid pNL2
Ochrobactrum anthropi ATCC 49188
Orientia tsutsugamushi Boryong
Parabacteroides distasonis ATCC 8503
Paracoccus denitrificans PD1222
Parvibaculum lavamentivorans DS-1
Pelobacter propionicus DSM 2379
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Polynucleobacter sp. QLW-P1DMWA-1
Prochlorococcus marinus str. AS9601
Prochlorococcus marinus str. MIT 9215
Prochlorococcus marinus str. MIT 9301
Prochlorococcus marinus str. MIT 9303
Prochlorococcus marinus str. MIT 9515
Prochlorococcus marinus str. NATL1A
Prosthecochloris vibrioformis DSM 265
Pseudoalteromonas atlantica T6c
Pseudomonas aeruginosa PA7
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas entomophila L48
Pseudomonas mendocina ymp
Pseudomonas putida F1
Pseudomonas stutzeri A1501
Psychrobacter cryohalolentis K5
Psychrobacter sp. PRwf-1
Psychromonas ingrahamii 37
Ralstonia eutropha H16
Ralstonia metallidurans CH34
Rhizobium leguminosarum bv. viciae 3841
Rhizobium etli CFN 42 symbiotic plasmid p42d
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides 2.4.1 plasmid A
Rhodobacter sphaeroides 2.4.1 plasmid E
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris BisB5
Rickettsia akari str. Hartford
Rickettsia bellii OSU 85-389
Rickettsia bellii RML369-C
Rickettsia canadensis str. McKiel
Rickettsia massiliae MTU5
Rickettsia rickettsii str. 'Sheila Smith'
Roseiflexus castenholzii DSM 13941
Roseiflexus sp. RS-1
Roseobacter denitrificans OCh 114
Serratia proteamaculans 568
Shewanella amazonensis SB2B
Shewanella baltica OS155
Shewanella baltica OS185
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella putrefaciens CN-32
Shewanella sediminis HAW-EB3
Shewanella sp. ANA-3
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. W3-18-1
Shigella dysenteriae Sd197 plasmid pSD197_spA
Shigella flexneri 5 str. 8401
Shigella sonnei Ss046 plasmid pSS046_spA
Shigella sonnei Ss046 plasmid pSS046_spB
Shigella sonnei Ss046 plasmid pSS046_spC
Silicibacter sp. TM1040
Sinorhizobium medicae WSM419
Solibacter usitatus Ellin6076
Sphingomonas wittichii RW1
Sphingopyxis alaskensis RB2256
Sulfurovum sp. NBC37-1
Synechococcus sp. CC9311
Synechococcus sp. RCC307
Synechococcus sp. WH 7803
Syntrophobacter fumaroxidans MPOB
Syntrophomonas wolfei subsp. wolfei str. Goettingen
Syntrophus aciditrophicus SB
Thermosipho melanesiensis BI429
Thermotoga petrophila RKU-1
Trichodesmium erythraeum IMS101
Verminephrobacter eiseniae EF01-2
Vibrio cholerae O395
Vibrio harveyi ATCC BAA-1116
Xanthobacter autotrophicus Py2
Xanthomonas oryzae pv. oryzae MAFF 311018
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia pestis Antiqua
Yersinia pestis Nepal516
Yersinia pestis Pestoides F
Yersinia pseudotuberculosis IP 31758

Gram positive:
Acidothermus cellulolyticus 11B
Alkaliphilus metalliredigens QYMF
Alkaliphilus oremlandii OhILAs
Arthrobacter aurescens TC1
Arthrobacter sp. FB24
Bacillus amyloliquefaciens FZB42
Bacillus cereus subsp. cytotoxis NVH 391-98
Bacillus pumilus SAFR-032
Bacillus thuringiensis str. Al Hakam
Bifidobacterium adolescentis ATCC 15703
Caldicellulosiruptor saccharolyticus DSM 8903
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Clostridium beijerinckii NCIMB 8052
Clostridium botulinum A str. ATCC 19397
Clostridium botulinum A str. ATCC 3502
Clostridium botulinum A str. Hall
Clostridium botulinum F str. Langeland
Clostridium difficile 630
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium perfringens SM101
Clostridium thermocellum ATCC 27405
Corynebacterium glutamicum R
Dehalococcoides sp. BAV1
Deinococcus geothermalis DSM 11300
Desulfotomaculum reducens MI-1
Frankia alni ACN14a
Frankia sp. EAN1pec
Geobacillus thermodenitrificans NG80-2
Kineococcus radiotolerans SRS30216
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus gasseri ATCC 33323
Lactobacillus reuteri F275
Lactococcus lactis subsp. cremoris MG1363
Lactococcus lactis subsp. cremoris SK11
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Listeria welshimeri serovar 6b str. SLCC5334
Mycobacterium avium 104
Mycobacterium bovis BCG str. Pasteur 1173P2
Mycobacterium gilvum PYR-GCK
Mycobacterium smegmatis str. MC2 155
Mycobacterium sp. JLS
Mycobacterium sp. KMS
Mycobacterium sp. MCS
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis H37Ra
Mycobacterium ulcerans Agy99
Mycobacterium vanbaalenii PYR-1
Nocardioides sp. JS614
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745
Pelotomaculum thermopropionicum SI
Rhodococcus sp. RHA1
Rubrobacter xylanophilus DSM 9941
Saccharopolyspora erythraea NRRL 2338
Salinispora tropica CNB-440
Staphylococcus aureus subsp. aureus Mu3
Streptococcus gordonii str. Challis substr. CH1
Streptococcus pneumoniae D39
Streptococcus pyogenes MGAS10270
Streptococcus pyogenes MGAS10750
Streptococcus pyogenes MGAS2096
Streptococcus pyogenes MGAS9429
Streptococcus pyogenes str. Manfredo
Streptococcus sanguinis SK36
Streptococcus suis 05ZYH33
Streptococcus suis 98HAH33
Streptococcus thermophilus LMD-9

December 28, 2006:

Scheduled downtime

- db.psort.org is unavailable all day due to server maintenance.

August 9, 2006:

cPSORTdb update

- The following recently sequenced bacterial chromosomes and plasmids have been added to the cPSORTdb dataset:

Burkholderia xenovorans LB400 chromosome 1
Burkholderia xenovorans LB400 chromosome 2
Burkholderia xenovorans LB400 chromosome 3
Polaromonas sp. JS666
Polaromonas sp. JS666 plasmid 1
Polaromonas sp. JS666 plasmid 2
Rhodococcus sp. RHA1
Rhodococcus sp. RHA1 plasmid pRHL1
Rhodococcus sp. RHA1 plasmid pRHL2
Rhodococcus sp. RHA1 plasmid pRHL3

August 1, 2006:

PSORTdb feature update

- PSORTdb's Text Search function has been updated to allow users to browse search results using the browser's Forward and Back buttons without losing their previous search terms and result lists. This is also a fix to the previous problem of warning messages of "POSTDATA" (Firefox) and "Page Expired" (Internet Explorer) sometimes appearing when users clicked the Back button while browsing multiple pages of search results.

May 30, 2006:

cPSORTdb update

- The following plasmids from organisms with sequenced genomes have been added to the cPSORTdb dataset:

Gram positive:
Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-I
Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-II
Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-III
Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-IV
Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1
Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2
Bacillus cereus ATCC 10987 plasmid pBc10987
Bacillus cereus ATCC 14579 plasmid pBClin15
Bacillus cereus E33L plasmid pE33L466
Bacillus cereus E33L plasmid pE33L5
Bacillus cereus E33L plasmid pE33L54
Bacillus cereus E33L plasmid pE33L8
Bacillus cereus E33L plasmid pE33L9
Bacillus thuringiensis serovar konkukian str. 97-27 plasmid pBT9727
Bifidobacterium longum NCC2705 plasmid pBLO1
Clostridium acetobutylicum ATCC 824 plasmid pSOL1
Clostridium perfringens str. 13 plasmid pCP13
Clostridium tetani E88 plasmid pE88
Corynebacterium jeikeium K411 plasmid pKW4
Deinococcus radiodurans R1 plasmid CP1
Deinococcus radiodurans R1 plasmid MP1
Enterococcus faecalis V583 plasmid pTEF1
Enterococcus faecalis V583 plasmid pTEF2
Enterococcus faecalis V583 plasmid pTEF3
Geobacillus kaustophilus HTA426 plasmid pHTA426
Jannaschia sp. CCS1 plasmid1
Lactobacillus plantarum WCFS1 plasmid pWCFS101
Lactobacillus plantarum WCFS1 plasmid pWCFS102
Lactobacillus plantarum WCFS1 plasmid pWCFS103
Lactobacillus salivarius subsp. salivarius UCC118 plasmid pSF118-44
Lactobacillus salivarius subsp. salivarius UCC118 plasmid pSF118-20
Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118
Listeria innocua Clip11262 plasmid pLI100
Nocardia farcinica IFM 10152 plasmid pNF1
Nocardia farcinica IFM 10152 plasmid pNF2
Staphylococcus aureus subsp. aureus COL plasmid pT181
Staphylococcus aureus subsp. aureus MSSA476 plasmid pSAS
Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp
Staphylococcus aureus subsp. aureus N315 plasmid pN315
Staphylococcus aureus subsp. aureus USA300 plasmid pUSA01
Staphylococcus aureus subsp. aureus USA300 plasmid pUSA02
Staphylococcus aureus subsp. aureus USA300 plasmid pUSA03
Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-01
Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-02
Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-03
Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-04
Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-05
Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-06
Staphylococcus epidermidis RP62A plasmid pSERP
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 pSSP1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 pSSP2
Streptomyces avermitilis MA-4680 plasmid SAP1
Streptomyces coelicolor A3(2) plasmid SCP1
Streptomyces coelicolor A3(2) plasmid SCP2

Gram negative:
Agrobacterium tumefaciens str. C58 plasmid AT
Agrobacterium tumefaciens str. C58 plasmid AT
Agrobacterium tumefaciens str. C58 plasmid Ti
Agrobacterium tumefaciens str. C58 plasmid Ti
Anabaena variabilis ATCC 29413 plasmid A
Anabaena variabilis ATCC 29413 plasmid B
Anabaena variabilis ATCC 29413 plasmid C
Aquifex aeolicus VF5 plasmid ece1
Azoarcus sp. EbN1 plasmid 1
Azoarcus sp. EbN1 plasmid 2
Bacteroides fragilis NCTC 9343 plasmid pBF9343
Bacteroides fragilis YCH46 plasmid pBFY46
Bacteroides thetaiotaomicron VPI-5482 plasmid p5482
Borrelia burgdorferi B31 plasmid cp32-1
Borrelia burgdorferi B31 plasmid cp32-3
Borrelia burgdorferi B31 plasmid cp32-4
Borrelia burgdorferi B31 plasmid cp32-6
Borrelia burgdorferi B31 plasmid cp32-7
Borrelia burgdorferi B31 plasmid cp32-8
Borrelia burgdorferi B31 plasmid cp32-9
Borrelia burgdorferi B31 plasmid cp9
Borrelia burgdorferi B31 plasmid lp17
Borrelia burgdorferi B31 plasmid lp21
Borrelia burgdorferi B31 plasmid lp25
Borrelia burgdorferi B31 plasmid lp28-1
Borrelia burgdorferi B31 plasmid lp28-2
Borrelia burgdorferi B31 plasmid lp28-3
Borrelia burgdorferi B31 plasmid lp28-4
Borrelia burgdorferi B31 plasmid lp36
Borrelia burgdorferi B31 plasmid lp38
Borrelia burgdorferi B31 plasmid lp5
Borrelia burgdorferi B31 plasmid lp54
Borrelia burgdorferi B31 plasmid lp56
Borrelia burgdorferi plasmid cp26
Borrelia garinii PBi plasmid cp26
Borrelia garinii PBi plasmid lp54
Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pLeu
Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pTrp
Chlamydia muridarum Nigg plasmid pMoPn
Chlamydia trachomatis A/HAR-13 plasmid pCTA
Chlamydophila caviae GPIC plasmid pCpGP1
Chlamydophila felis Fe/C-56 plasmid pCfe1
Coxiella burnetii RSA 493 plasmid pQpH1
Desulfotalea psychrophila LSv54 plasmid large
Desulfotalea psychrophila LSv54 plasmid small
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough megaplasmid
Escherichia coli O157:H7 plasmid pO157
Escherichia coli O157:H7 plasmid pOSAK1
Geobacter metallireducens GS-15 plasmid unnamed
Gluconobacter oxydans 621H plasmid pGOX1
Gluconobacter oxydans 621H plasmid pGOX2
Gluconobacter oxydans 621H plasmid pGOX3
Gluconobacter oxydans 621H plasmid pGOX4
Gluconobacter oxydans 621H plasmid pGOX5
Legionella pneumophila str. Lens plasmid pLPL
Legionella pneumophila str. Paris plasmid pLPP
Mesorhizobium loti MAFF303099 plasmid pMLa
Mesorhizobium loti MAFF303099 plasmid pMLb
Nitrosococcus oceani ATCC 19707 plasmid A
Nitrosospira multiformis ATCC 25196 plasmid 1
Nitrosospira multiformis ATCC 25196 plasmid 2
Nitrosospira multiformis ATCC 25196 plasmid 3
Nostoc sp. PCC 7120 plasmid pCC7120alpha
Nostoc sp. PCC 7120 plasmid pCC7120beta
Nostoc sp. PCC 7120 plasmid pCC7120delta
Nostoc sp. PCC 7120 plasmid pCC7120epsilon
Nostoc sp. PCC 7120 plasmid pCC7120gamma
Nostoc sp. PCC 7120 plasmid pCC7120zeta
Photobacterium profundum SS9 plasmid pPBPR1
Pseudomonas syringae pv. phaseolicola 1448A large plasmid
Pseudomonas syringae pv. phaseolicola 1448A small plasmid
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B
Ralstonia eutropha JMP134 megaplasmid
Ralstonia eutropha JMP134 plasmid 1
Ralstonia solanacearum GMI1000 plasmid pGMI1000MP
Rhizobium etli CFN 42 plasmid p42a
Rhizobium etli CFN 42 plasmid p42b
Rhizobium etli CFN 42 plasmid p42c
Rhizobium etli CFN 42 plasmid p42e
Rhizobium etli CFN 42 plasmid p42f
Rhodobacter sphaeroides 2.4.1 plasmid B
Rhodobacter sphaeroides 2.4.1 plasmid C
Rhodobacter sphaeroides 2.4.1 plasmid D
Rhodoferax ferrireducens DSM 15236 plasmid1
Rhodopseudomonas palustris CGA009 plasmid pRPA
Rhodospirillum rubrum ATCC 11170 plasmid unnamed
Rickettsia felis URRWXCal2 plasmid pRF
Rickettsia felis URRWXCal2 plasmid pRFdelta
Salinibacter ruber DSM 13855 plasmid pSR35
Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid pSC138
Salmonella enterica subsp. enterica serovar Choleraesuis str. plasmid pSCV50
Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1
Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2
Salmonella typhimurium LT2 plasmid pSLT
Shewanella oneidensis MR-1 megaplasmid pMR-1
Shigella boydii Sb227 plasmid pSB4_227
Shigella dysenteriae Sd197 plasmid pSD1_197
Shigella flexneri 2a str. 301 plasmid pCP301
Shigella sonnei Ss046 plasmid pSS_046
Silicibacter pomeroyi DSS-3 megaplasmid
Sinorhizobium meliloti 1021 plasmid pSymA
Sinorhizobium meliloti 1021 plasmid pSymB
Sodalis glossinidius str. 'morsitans' plasmid pSG1
Sodalis glossinidius str. 'morsitans' plasmid pSG2
Sodalis glossinidius str. 'morsitans' plasmid pSG3
Synechococcus elongatus PCC 7942 plasmid 1
Synechocystis sp. PCC 6803 plasmid pSYSA
Synechocystis sp. PCC 6803 plasmid pSYSG
Synechocystis sp. PCC 6803 plasmid pSYSM
Synechocystis sp. PCC 6803 plasmid pSYSX
Thermus thermophilus HB27 plasmid pTT27
Thermus thermophilus HB8 plasmid pTT27
Thermus thermophilus HB8 plasmid pTT8
Vibrio fischeri ES114 plasmid pES100
Vibrio vulnificus YJ016 plasmid pYJ016
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis plasmid pWb1
Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC33
Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC64
Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183
Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV19
Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV2
Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV38
Xylella fastidiosa 9a5c plasmid pXF1.3
Xylella fastidiosa 9a5c plasmid pXF51
Xylella fastidiosa Temecula1 plasmid pXFPD1.3
Yersinia pestis biovar Medievalis str. 91001 plasmid pCD1
Yersinia pestis biovar Medievalis str. 91001 plasmid pCRY
Yersinia pestis biovar Medievalis str. 91001 plasmid pMT1
Yersinia pestis biovar Medievalis str. 91001 plasmid pPCP1
Yersinia pestis CO92 plasmid pCD1
Yersinia pestis CO92 plasmid pMT1
Yersinia pestis CO92 plasmid pPCP1
Yersinia pestis KIM plasmid pMT-1
Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953
Yersinia pseudotuberculosis IP 32953 plasmid pYV

April 24, 2006:

cPSORTdb update

- The following recently sequenced bacterial genomes have been added to the cPSORTdb dataset:

Anaeromyxobacter dehalogenans 2CP-C
Anaplasma phagocytophilum HZ
Aster yellows witches'-broom phytoplasma AYWB
Brucella melitensis biovar Abortus 2308 chromosome I
Brucella melitensis biovar Abortus 2308 chromosome II
Burkholderia pseudomallei 1710b chromosome I
Burkholderia pseudomallei 1710b chromosome II
Burkholderia sp. 383 chromosome 1
Burkholderia sp. 383 chromosome 2
Burkholderia sp. 383 chromosome 3
Burkholderia thailandensis E264 chromosome I
Burkholderia thailandensis E264 chromosome II
Carboxydothermus hydrogenoformans Z-2901
Chlamydia trachomatis A/HAR-13
Chlamydophila felis Fe/C-56
Chlorobium chlorochromatii CaD3
Desulfitobacterium hafniense Y51
Desulfovibrio desulfuricans G20
Ehrlichia chaffeensis str. Arkansas
Erythrobacter litoralis HTCC2594
Escherichia coli W3110 DNA
Francisella tularensis subsp. holarctica
Frankia sp. CcI3
Geobacter metallireducens GS-15
Hahella chejuensis KCTC 2396
Jannaschia sp. CCS1
Lactobacillus sakei subsp. sakei 23K
Magnetospirillum magneticum AMB-1
Moorella thermoacetica ATCC 39073
Mycoplasma capricolum subsp. capricolum ATCC 27343
Neorickettsia sennetsu str. Miyayama
Nitrosococcus oceani ATCC 19707
Nitrosospira multiformis ATCC 25196 chromosome 1
Novosphingobium aromaticivorans DSM 12444
Pelobacter carbinolicus DSM 2380
Pelodictyon luteolum DSM 273
Prochlorococcus marinus str. MIT 9312
Pseudoalteromonas haloplanktis TAC125 chromosome I
Pseudoalteromonas haloplanktis TAC125 chromosome II
Pseudomonas fluorescens PfO-1
Rhizobium etli CFN 42
Rhodobacter sphaeroides 2.4.1 chromosome 1
Rhodobacter sphaeroides 2.4.1 chromosome 2
Rhodoferax ferrireducens DSM 15236
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris HaA2
Rhodospirillum rubrum ATCC 11170
Saccharophagus degradans 2-40
Salinibacter ruber DSM 13855
Shigella boydii Sb227
Shigella dysenteriae Sd197
Sodalis glossinidius str. 'morsitans'
Staphylococcus aureus RF122
Staphylococcus aureus subsp. aureus NCTC 8325
Staphylococcus aureus subsp. aureus USA300
Streptococcus agalactiae A909
Synechococcus elongatus PCC 7942
Synechococcus sp. CC9605
Synechococcus sp. CC9902
Synechococcus sp. JA-2-3B'a(2-13)
Synechococcus sp. JA-3-3Ab
Thiomicrospira crunogena XCL-2
Thiomicrospira denitrificans ATCC 33889
Xanthomonas campestris pv. vesicatoria str. 85-10

April 12, 2006:

ePSORTdb update (v2.0.1)

- Corrected ePSORTdb database download files to include March 20, 2006 modification.

March 20, 2006:

ePSORTdb update (v2.0.1)

- Modified gram_stain to negative for Mycoplasma genomes. See more details about Mycoplasma genomes here.

October 3, 2005:

ePSORTdb update

- The obsolete Tax_ID 1899 of the Streptomyces chrysomallus was updated to 1892.

cPSORTdb update

- As a result of updating the SCL for protein PopD in ePSORTdb (see Sept 15) the following proteins were updated gi15596906, gi37527617, gi28898430

- The following recently sequenced bacterial genomes have been added to the cPSORTdb dataset:

Anabaena variabilis ATCC 29413
Brucella abortus biovar 1 str. 9-941 chromosome I
Brucella abortus biovar 1 str. 9-941 chromosome II
Candidatus Blochmannia pennsylvanicus str. BPEN
Candidatus Pelagibacter ubique HTCC1062
Chlamydophila abortus S26/3
Colwellia psychrerythraea 34H
Corynebacterium glutamicum ATCC 13032
Corynebacterium jeikeium K411
Dechloromonas aromatica RCB
Dehalococcoides sp. CBDB1
Ehrlichia canis str. Jake
Haemophilus influenzae 86-028NP
Mycoplasma hyopneumoniae 7448
Mycoplasma hyopneumoniae J
Mycoplasma synoviae 53
Nitrobacter winogradskyi Nb-255
Prochlorococcus marinus str. NATL2A
Pseudomonas fluorescens Pf-5
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas syringae pv. syringae B728a
Psychrobacter arcticum 273-4
Ralstonia eutropha JMP134 chromosome 1
Ralstonia eutropha JMP134 chromosome 2
Rickettsia felis URRWXCal2
Salmonella enterica subsp. enterica serovar Choleraesuis str.
Shigella sonnei Ss046
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus
Streptococcus pyogenes MGAS5005
Streptococcus pyogenes MGAS6180
Thermobifida fusca YX
Thiobacillus denitrificans ATCC 25259
Xanthomonas campestris pv. campestris str. 8004

September 15, 2005:

ePSORTdb update

- Updated SCL for protein PopD gi15596906 from outer membrane to extracellular.

March 29, 2005:

ePSORTdb minor change

- Updated taxonomy id 510 to 106590.

cPSORTdb update with new genomes predictions

The following recently sequenced bacterial genomes have been added to the cPSORTdb dataset:

Anaplasma marginale str. St. Maries
Azoarcus sp. EbN1
Bacillus clausii KSM-K16
Bacteroides fragilis NCTC 9343
Campylobacter jejuni RM1221
Dehalococcoides ethenogenes 195
Ehrlichia ruminantium str. Gardel
Ehrlichia ruminantium str. Welgevonden
Francisella tularensis subsp. tularensis Schu 4
Geobacillus kaustophilus HTA426
Gluconobacter oxydans 621H
Idiomarina loihiensis L2TR
Lactobacillus acidophilus NCFM
Legionella pneumophila str. Lens
Legionella pneumophila str. Paris
Mycoplasma hyopneumoniae 232
Neisseria gonorrhoeae FA 1090
Nocardia farcinica IFM 10152
Photobacterium profundum SS9 chromosome 1
Photobacterium profundum SS9 chromosome 2
Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC
Silicibacter pomeroyi DSS-3
Staphylococcus aureus subsp. aureus COL
Staphylococcus epidermidis RP62A
Streptococcus thermophilus CNRZ1066
Streptococcus thermophilus LMG 18311
Synechococcus elongatus PCC 6301
Thermus thermophilus HB27
Thermus thermophilus HB8
Vibrio fischeri ES114 chromosome I
Vibrio fischeri ES114 chromosome II
Wolbachia endosymbiont strain TRS of Brugia malayi
Xanthomonas oryzae pv. oryzae KACC10331
Zymomonas mobilis subsp. mobilis ZM4

December 22, 2004:

ePSORTdb update

- 5 Gram-negative outer membrane proteins were added (gi1808969, gi16121511, gi16763962, gi3914214, gi3914215).

- SCL annotations of the following proteins gi2499110, gi2499109, gi2499108 and gi2499107 were updated to Outermembrane,Extracellular; gi15599403 to Periplasmic,OuterMembrane, and gi15600305 to OuterMembrane,Extracellular

November 17, 2004:

cPSORTdb update with new genomes predictions

The following recently sequenced bacterial genomes have been added to the cPSORTdb dataset:

Acinetobacter sp. ADP1
Bacillus anthracis str. Ames 0581
Bacillus anthracis str. Sterne
Bacillus cereus ZK
Bacillus licheniformis ATCC 14580
Bacillus licheniformis DSM 13
Bacillus thuringiensis serovar konkukian
Bacteroides fragilis YCH46 chromosome
Bartonella henselae str. Houston-1
Bartonella quintana str. Toulose
Borrelia garinii PBi
Burkholderia mallei ATCC 23344 chromosome 1
Burkholderia mallei ATCC 23344 chromosome 2
Burkholderia pseudomallei K96243 chromosome 1
Burkholderia pseudomallei K96243 chromosome 2
Desulfotalea psychrophila LSv54 chromosome
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Erwinia carotovora subsp. atroseptica SCRI1043
Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Leifsonia xyli subsp. xyli str. CTCB0
Listeria monocytogenes str. 4b F2365
Mannheimia succiniciproducens MBEL55E
Mesoplasma florum L1
Methylococcus capsulatus str. Bath
Mycoplasma mobile 163K
Parachlamydia sp.UWE25
Propionibacterium acnes KPA171202
Rickettsia typhi strain wilmington
Staphylococcus aureus subsp. aureus MSSA476
Staphylococcus aureus subsp. aureus strain MRSA252
Streptococcus pyogenes MGAS10394
Symbiobacterium thermophilum IAM 14863
Thermus thermophilus HB27 chromosome
Yersinia pseudotuberculosis IP32953 chromosome

ePSORTdb update

- The periplasmic hook length control protein (FliK) of T. denticola (gi4580016) was added.

- The obsolete Tax_ID (1700) of the B. liquefaciens adenylate cyclase (gi117790) was updated to 37929.

 

August 12, 2004: PSORTdb version 1.0 release

PSORTdb version 1.0 has been released.